Scripts/Data

Under construction! Coming soon (meanwhile, e-mail me):

Detection of genomic islands with hidden Markov models (HMM)

R-script to apply an HMM with 3 normally distributed states to SNP quantile values from an outlier analysis. Following the approach by Hofer et al (2012) BMC Genomics, with modifications described in Marques et al (2016) PLOS Genetics.

R-script to apply an HMM with 3 normally distributed states to SNP FST values, similar to Soria-Carrasco et al (2014) Science, but with a different transformation method as described in Marques et al (2016) Molecular Ecology.

Threespine stickleback QTL, candidate genes and outlier regions

20150803_GASACU_ROItable_DavidMarques.xlsx: Excel-table with collected information on stickleack QTL, candidate genes and outlier regions from the literature published up to April 2016, where data was accessible.