Peer-reviewed
Liu Z, M Roesti, DA Marques, M Hiltbrunner, V Saladin & CL Peichel (2022) Chromosomal fusions facilitate adaptation to divergent environments in threespine stickleback. Molecular Biology and Evolution 39: msab358. doi:10.1093/molbev/msab358
De-Kayne R, OM Selz, DA Marques, D Frei, O Seehausen & PGD Feulner (2022) Hybridization and a mixture of small and large-effect loci facilitate adaptive radiation. bioRxiv: 2022.02.18.481029. doi:10.1101/2022.02.18.481029
Excoffier L, N Marchi, DA Marques, R Matthey-Doret, A Gouy & VC Sousa (2021) fastsimcoal2: demographic inference under complex evolutionary scenarios. Bioinformatics: btab468. doi:10.1093/bioinformatics/btab468
Freudinger A, D Josi, T Thünken, F Herder, JM Flury, DA Marques, M Taborsky & JG Frommen (2021) Ecological variation drives morphological differentiation in a highly social vertebrate. Functional Ecology 35: 2266–2281. doi:10.1111/1365-2435.13857
Marques DA, K Lucek, VC Sousa, L Excoffier & O Seehausen (2021) Reply to “Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin”. Nature Communications 12: 2807. doi:10.1038/s41467-021-23092-1
Svensson EI, SJ Arnold, R Bürger, K Csilléry, J Draghi, JM Henshaw, AG Jones, S De Lisle, DA Marques, K McGuigan, MN Simon & A Runemark (2021) Correlational selection in the age of genomics. Nature Ecology & Evolution 5: 562-573. doi:10.1038/s41559-021-01413-3
Maumary L, F Schneider & DA Marques (2021) Seltene Vogelarten und ungewöhnliche Vogelbeobachtungen in der Schweiz im Jahre 2020 [Rare birds and unusual observations in Switzerland in 2020.]. Ornithologischer Beobachter 118: 302-329 [in German]. PDF.
Hudson CM, K Lucek, DA Marques, TJ Alexander, M Moosmann, P Spaak, O Seehausen & B Matthews (2021) Threespine stickleback in Lake Constance: the ecology and genomic substrate of a recent invasion. Frontiers in Ecology and Evolution 8: 611672. doi:10.3389/fevo.2020.611672
Marques DA & S Jaquier (2020) Seltene Vogelarten und ungewöhnliche Vogelbeobachtungen in der Schweiz im Jahre 2019 [Rare birds and unusual observations in Switzerland in 2019.]. Ornithologischer Beobachter 117: 312-337 [in German]. PDF. Marques DA & S Jaquier (2020) Oiseaux rares et observations inhabituelles en Suisse en 2019. Nos Oiseaux 67: 247-271 [in French]. PDF
McGee MD, SR Borstein, JI Meier, DA Marques, S Mwaiko, A Taabu, MA Kishe, B O’Meara, R Bruggmann, L Excoffier & O Seehausen (2020) The ecological and genomic basis of explosive adaptive radiation. Nature 586: 75-79. doi:10.1038/s41586-020-2652-7
Marques DA=, K Lucek=, VC Sousa, L Excoffier & O Seehausen (2019) Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback. Nature Communications 10: 4240. doi:10.1038/s41467-019-12182-w, =equal contribution
Ishikawa A, (…), DA Marques et al. (2019) A key metabolic gene for recurrent freshwater colonization and radiation in fishes. Science 364: 886-889. doi:10.1126/science.aau5656
Marques DA=, JI Meier= & O Seehausen (2019) A combinatorial view on speciation and adaptive radiation. Trends in Ecology & Evolution 34: 531-544. doi:10.1016/j.tree.2019.02.008, =equal contribution
Marques DA, FC Jones, F Di Palma, DM Kingsley & TE Reimchen (2018) Experimental evidence for rapid genomic adaptation to a new niche in an adaptive radiation. Nature Ecology & Evolution 2: 1130-1140. doi:10.1038/s41559-018-0581-8
Meier JI, DA Marques, CE Wagner, L Excoffier & O Seehausen (2018): Genomics of parallel ecological speciation in Lake Victoria cichlids. Molecular Biology and Evolution 35: 1489-1506. doi:10.1093/molbev/msy051
Marques DA (2017) Erstnachweis des Iberienzilpzalps Phylloscopus ibericus in der Schweiz [First record of Iberian Chiffchaff Phylloscopus ibericus in Switzerland.]. Ornithologischer Beobachter 114: 11-18. PDF
Ammitzboell NP, S Werner, DA Marques & M Schweizer (2017) Pacific Loon at Silvaplanersee, Switzerland, in December 2015, with notes on genetics, identification and WP records. Dutch Birding 39: 228-238. Abstract
Nater A, MP Mattle-Greminger, (…), DA Marques et al. (2017): Morphometric, behavioral and genomic evidence for a new orangutan species. Current Biology 27: 3487-3498. doi:10.1016/j.cub.2017.09.047
Marques DA (2017) Adaptation despite gene flow? – Low recombination helps. Molecular Ecology 26: 4361-4363. doi:
Marques DA, JS Taylor, FC Jones, F Di Palma, DM Kingsley & TE Reimchen (2017) Convergent evolution of SWS2 opsin facilitates adaptive radiation of threespine stickleback into different light environments. PLOS Biology 15: e2001627. doi:10.1371/journal.pbio.2001627
Meier JI, DA Marques, S Mwaiko, CE Wagner, L Excoffier & O Seehausen (2017) Ancient hybridization fuels rapid cichlid fish adaptive radiations. Nature Communications 8: 14363. doi:10.1038/ncomms14363
Peichel CL & DA Marques (2017) The genetic and molecular architecture of phenotypic diversity in sticklebacks. Philosophical Transactions of the Royal Society B,
Meier JI, VC Sousa, DA Marques, OM Selz, CE Wagner, L Excoffier & O Seehausen (2016) Demographic modelling with whole genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Molecular Ecology 26: 123-141. doi:
Marques DA, K Lucek, MP Haesler, AF Feller, JI Meier, CE Wagner, L Excoffier & O Seehausen (2016) Genomic landscape of early ecological speciation initiated by selection on nuptial color. Molecular Ecology 26: 7-24. doi:
Feller AF, O Seehausen, K Lucek & DA Marques (2016) Habitat choice and female preference in a polymorphic stickleback population. Evolutionary Ecology Research 17: 419-435. Abstract
Marques DA, K Lucek, JI Meier, S Mwaiko, CE Wagner, L Excoffier & O Seehausen (2016) Genomics of rapid incipient speciation in sympatric threespine stickleback. PLOS Genetics 12: e1005887. doi:10.1371/journal.pgen.1005887
Karvonen A, K Lucek, DA Marques & O Seehausen (2015) Divergent macroparasite infections in parapatric Swiss lake-stream pairs of threespine stickleback (Gasterosteus aculeatus). PLOS One 10: e0130579. doi:10.1371/journal.pone.0130579
Marques DA & M Thoma (2015) Seltene Vogelarten und ungewöhnliche Vogelbeobachtungen in der Schweiz im Jahre 2014 [Rare birds and unusual observations in Switzerland in 2014.]. Ornithologischer Beobachter 112: 161-188 [in German]. PDF. Marques DA, M Thoma & F Schneider (2015) Oiseaux rares et observations inhabituelles en Suisse en 2014. Nos Oiseaux 62: 155-174 [in French]. PDF
Seehausen O, RK Butlin, (…) DA Marques et al. (2014) Genomics and the origin of species. Nature Reviews Genetics 15: 176-192. doi:10.1038/nrg3644
Marques DA, M Thoma & P Knaus (2013) Seltene Vogelarten und ungewöhnliche Vogelbeobachtungen in der Schweiz im Jahre 2012 [Rare birds and unusual observations in Switzerland in 2012.]. Ornithologischer Beobachter 110: 385-418 [in German]. Marques DA, M Thoma, P Knaus & L Vallotton (2013) Oiseaux rares et observations inhabituelles en Suisse en 2012. Nos Oiseaux 60: 215-236 [in French]. PDF, PDF
Posa MRC & DA Marques (2012) Peat swamp forest birds of the Tuanan research station, Central Kalimantan, Indonesia, with notes on habitat specialists. Forktail 28: 29-37. PDF
Weggler M, DA Marques, Y Schwarzenbach & M Widmer (2011) Wirkung von Uferschutzzonen am Greifensee auf das Brutverhalten des Haubentauchers Podiceps cristatus, den Bestand von Brutvögeln des Röhrichts und überwinternde Wasservögel [Effect of bird refuges on the Greifensee (canton of Zürich) on the breeding behavior of great crested grebe Podiceps cristatus, the breeding population of birds in the reedbeds and waterbirds in winter.]. Ornithologischer Beobachter 108: 55-70. PDF
Marques DA (2009) Die Ausbildung als wichtiges Standbein der Ala. Ornithologischer Beobachter 106: 129-138. PDF
Ritschard M & DA Marques (2007) Tawny Fish-Owl Ketupa flavipes in Arunachal Pradesh, India. Indian Birds 3: 108. PDF
Popular science articles
Marques DA (2011) Holzbaumeister mit Schlüsselfunktion. Der Schwarzspecht – Vogel des Jahres 2011 [Timber master builder with ecological key role. The black woodpecker – bird of the year 2011]. Ornis 11/1: 12-15. PDF
David Alexander Marques 
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