Publications

Peer-reviewed

Excoffier L, N Marchi, DA Marques, R Matthey-Doret, A Gouy & VC Sousa (2021) fastsimcoal2: demographic inference under complex evolutionary scenarios. Bioinformatics: btab468. doi:10.1093/bioinformatics/btab468

Freudinger A, D Josi, T Thünken, F Herder, JM Flury, DA Marques, M Taborsky & JG Frommen (2021) Ecological variation drives morphological differentiation in a highly social vertebrate. Functional Ecology 00: 1-16. doi:10.1111/1365-2435.13857

Marques DA, K Lucek, VC Sousa, L Excoffier & O Seehausen (2021) Reply to “Re-evaluating the evidence for facilitation of stickleback speciation by admixture in the Lake Constance basin”. Nature Communications 12: 2807. doi:10.1038/s41467-021-23092-1

Svensson EI, SJ Arnold, R Bürger, K Csilléry, J Draghi, JM Henshaw, AG Jones, S De Lisle, DA Marques, K McGuigan, MN Simon & A Runemark (2021) Correlational selection in the age of genomics. Nature Ecology & Evolution 5: 562-573. doi:10.1038/s41559-021-01413-3

Hudson CM, K Lucek, DA Marques, TJ Alexander, M Moosmann, P Spaak, O Seehausen & B Matthews (2021) Threespine stickleback in Lake Constance: the ecology and genomic substrate of a recent invasion. Frontiers in Ecology and Evolution 8: 611672. doi:10.3389/fevo.2020.611672

McGee MD, SR Borstein, JI Meier, DA Marques, S Mwaiko, A Taabu, MA Kishe, B O’Meara, R Bruggmann, L Excoffier & O Seehausen (2020) The ecological and genomic basis of explosive adaptive radiation. Nature 586: 75-79. doi:10.1038/s41586-020-2652-7

Marques DA⁼, K Lucek⁼, VC Sousa, L Excoffier & O Seehausen (2019) Admixture between old lineages facilitated contemporary ecological speciation in Lake Constance stickleback. Nature Communications 10: 4240. doi:10.1038/s41467-019-12182-w, ⁼equal contribution

Ishikawa A, (…), DA Marques et al. (2019) A key metabolic gene for recurrent freshwater colonization and radiation in fishes. Science 364: 886-889. doi:10.1126/science.aau5656

Marques DA⁼, JI Meier⁼ & O Seehausen (2019) A combinatorial view on speciation and adaptive radiation. Trends in Ecology & Evolution 34: 531-544. doi:10.1016/j.tree.2019.02.008, ⁼equal contribution

Marques DA, FC Jones, F Di Palma, DM Kingsley & TE Reimchen (2018) Experimental evidence for rapid genomic adaptation to a new niche in an adaptive radiation. Nature Ecology & Evolution 2: 1130-1140. doi:10.1038/s41559-018-0581-8

Meier JI, DA Marques, CE Wagner, L Excoffier & O Seehausen (2018): Genomics of parallel ecological speciation in Lake Victoria cichlids. Molecular Biology and Evolution 35: 1489-1506. doi:10.1093/molbev/msy051

Nater A, MP Mattle-Greminger, (…), DA Marques et al. (2017): Morphometric, behavioral and genomic evidence for a new orangutan species. Current Biology 27: 3487-3498. doi:10.1016/j.cub.2017.09.047

Marques DA (2017) Adaptation despite gene flow? – Low recombination helps. Molecular Ecology 26: 4361-4363. doi:10.1111/mec.14251

Marques DA, JS Taylor, FC Jones, F Di Palma, DM Kingsley & TE Reimchen (2017) Convergent evolution of SWS2 opsin facilitates adaptive radiation of threespine stickleback into different light environments. PLOS Biology 15: e2001627. doi:10.1371/journal.pbio.2001627

Meier JI, DA Marques, S Mwaiko, CE Wagner, L Excoffier & O Seehausen (2017) Ancient hybridization fuels rapid cichlid fish adaptive radiations. Nature Communications 8: 14363. doi:10.1038/ncomms14363

Peichel CL & DA Marques (2017) The genetic and molecular architecture of phenotypic diversity in sticklebacks. Philosophical Transactions of the Royal Society B, 372: 20150486. doi:10.1098/rstb.2015.0486

Meier JI, VC Sousa, DA Marques, OM Selz, CE Wagner, L Excoffier & O Seehausen (2016) Demographic modelling with whole genome data reveals parallel origin of similar Pundamilia cichlid species after hybridization. Molecular Ecology 26: 123-141. doi:10.1111/mec.13838

Marques DA, K Lucek, MP Haesler, AF Feller, JI Meier, CE Wagner, L Excoffier & O Seehausen (2016) Genomic landscape of early ecological speciation initiated by selection on nuptial color. Molecular Ecology 26: 7-24. doi:10.1111/mec.13774

Feller AF, O Seehausen, K Lucek & DA Marques (2016) Habitat choice and female preference in a polymorphic stickleback population. Evolutionary Ecology Research 17: 419-435. Abstract

Marques DA, K Lucek, JI Meier, S Mwaiko, CE Wagner, L Excoffier & O Seehausen (2016) Genomics of rapid incipient speciation in sympatric threespine stickleback. PLOS Genetics 12: e1005887. doi:10.1371/journal.pgen.1005887

Karvonen A, K Lucek, DA Marques & O Seehausen (2015) Divergent macroparasite infections in parapatric Swiss lake-stream pairs of threespine stickleback (Gasterosteus aculeatus). PLOS One 10: e0130579. doi:10.1371/journal.pone.0130579

Seehausen O, RK Butlin, (…) DA Marques et al. (2014) Genomics and the origin of species. Nature Reviews Genetics 15: 176-192. doi:10.1038/nrg3644

Posa MRC & DA Marques (2012) Peat swamp forest birds of the Tuanan research station, Central Kalimantan, Indonesia, with notes on habitat specialists. Forktail 28: 29-37. PDF

Weggler M, DA Marques, Y Schwarzenbach & M Widmer (2011) Wirkung von Uferschutzzonen am Greifensee auf das Brutverhalten des Haubentauchers Podiceps cristatus, den Bestand von Brutvögeln des Röhrichts und überwinternde Wasservögel [Effect of bird refuges on the Greifensee (canton of Zürich) on the breeding behavior of great crested grebe Podiceps cristatus, the breeding population of birds in the reedbeds and waterbirds in winter.]. Ornithologischer Beobachter 108: 55-70. PDF

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